1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre02.g142850

Cre02.g142850 (30785856)


Aliases : 30785856

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm8 component


Gene families : OG_01_0000999 (OrthoFinder) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g142850
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.52 tig00020553_g10540.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder
Cpa|evm.model.tig00020614.84 tig00020614_g12199.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 OrthoFinder
Cz05g20220.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Cz11g16130.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
PTI_04G01510.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
Vocar.0043s0043.1 32886948 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.07 OrthoFinder
XM_002501524.1 MICPUN_81280, 81280 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_002503085.1 MICPUN_100884, 100884 Like-sm protein (LSM) 0.02 OrthoFinder
XM_003061100.1 MicpuC2_9210, 9210 Hypothetical protein 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59319.1_7038 PRW59319 U6 snRNA-associated Sm LSm1 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498230.1_7183 KAA8498230 Sm-like protein LSM8 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 7 75
No external refs found!