1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre02.g118500

Cre02.g118500 (30785510, COPB2)


Aliases : 30785510, COPB2

Description : Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.beta2 subunit


Gene families : OG_01_0001908 (OrthoFinder) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g118500
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.33 tig00020903_g15100.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder
Dusal.0118s00002.1 33199925 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.05 OrthoFinder
EOD19819 No alias COPB2, beta' subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
EOD29435 No alias COPB2, beta' subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
OT_01G02470.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.04 OrthoFinder
PTI_09G00050.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.06 OrthoFinder
Sro108_g054340.1 Contig2294.g19014 Coatomer subunit beta 0.08 OrthoFinder
Sro93_g048640.1 Contig3841.g29552 Coatomer subunit beta 0.05 OrthoFinder
TP04G00710.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_54449 54449 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.01 OrthoFinder
UNPLg00368.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.06 OrthoFinder
Vocar.0033s0044.1 32886333 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492792.1_2528 KAA8492792 Coatomer subunit beta'-1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 762
IPR001680 WD40_repeat 178 215
IPR001680 WD40_repeat 132 171
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 220 256
No external refs found!