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  5. Cre02.g108850

Cre02.g108850 (30784955, PRPL17)


Aliases : 30784955, PRPL17

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL17 component


Gene families : OG_01_0000944 (OrthoFinder) Phylogenetic Tree(s): OG0000944_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g108850
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000889.52 tig00000889_g5342.t1 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cz01g45010.t1 No alias Ribosomal protein L17 [Interproscan]. 0.05 OrthoFinder
EOD15659 No alias Ribosomal protein L17 [Interproscan]. 0.07 OrthoFinder
EOD37010 No alias Ribosomal protein L17 [Interproscan]. 0.05 OrthoFinder
OT_01G06040.1 No alias Ribosomal protein L17 [Interproscan]. 0.24 OrthoFinder
PTI_01G03920.1 No alias Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
Sro1192_g251070.1 Contig331.g4403 Protein L17 0.08 OrthoFinder
SymbC1.scaffold1290.1 1290.1 Ribosomal protein L17 [Interproscan]. 0.03 OrthoFinder
TP13G00420.1 No alias Ribosomal protein L17 [Interproscan]. 0.07 OrthoFinder
Transcript_contig_53809 53809 Ribosomal protein L17 [Interproscan]. 0.04 OrthoFinder
Vocar.0008s0070.1 32897191 Ribosomal protein L17 [Interproscan]. 0.12 OrthoFinder
XM_003056023.1 MicpuC2_8751, 8751 Ribosomal protein L17 [Interproscan]. 0.02 OrthoFinder
XM_003062771.1 MicpuC2_29418, 29418 Ribosomal protein L17 [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01002996.1_cds_GFH26033.1_20510 HaLaN_24106, GFH26033 Ribosomal protein L17 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39147.1_2649 PRW39147 50S ribosomal chloroplastic-like 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498883.1_7836 KAA8498883 50S ribosomal protein L17, chloroplastic 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034311 diol metabolic process IEP Enrichment
BP GO:0034312 diol biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 76 173
No external refs found!