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  5. Cre02.g095121

Cre02.g095121 (30785798)


Aliases : 30785798

Description : RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase


Gene families : OG_01_0000212 (OrthoFinder) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g095121
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020710.129 tig00020710_g13393.t1 RNA processing.RNA... 0.03 OrthoFinder
Cz13g08010.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Dusal.0755s00004.1 33194805 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
OT_06G04650.1 No alias Pseudouridine synthase, RsuA/RluA; RNA-binding S4 domain... 0.06 OrthoFinder
Transcript_contig_57854 57854 RNA-binding S4 domain [Interproscan]. 0.02 OrthoFinder
XM_003062138.1 MicpuC2_6566, 6566 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07162.1_1639 HaLaN_01923, GFH07162 S4 RNA-binding domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44607.1_2322 PRW44607 Ribosomal large subunit pseudouridine synthase B 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496505.1_234 KAA8496505 Putative RNA pseudouridine synthase 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493254.1_9555 KAA8493254 23S rRNA pseudouridine 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 99 140
IPR006145 PsdUridine_synth_RsuA/RluA 231 372
No external refs found!