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  5. Cre02.g089608

Cre02.g089608 (30785132)


Aliases : 30785132

Description : Regulator of telomere elongation helicase 1 homolog OS=Oryza sativa subsp. japonica


Gene families : OG_01_0000361 (OrthoFinder) Phylogenetic Tree(s): OG0000361_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g089608
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cz02g00030.t1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.03 OrthoFinder
Dusal.0184s00006.1 33197114 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
OT_04G00710.1 No alias ATP-dependent helicase, C-terminal; DNA polymerase... 0.08 OrthoFinder
Sro1149_g246570.1 Contig1585.g14401 Regulator of telomere elongation helicase 1 0.04 OrthoFinder
Sro13_g010240.1 Contig337.g4565 Helicase CHL1 0.02 OrthoFinder
Sro25_g017070.1 Contig1417.g13046 Regulator of telomere elongation helicase 1 0.02 OrthoFinder
TP03G00560.1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1241.1 32885467 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.06 OrthoFinder
XM_003063893.1 MicpuC2_30088, 30088 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44978.1_1968 PRW44978 Regulator of telomere elongation helicase 1 0.03 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490889.1_5661 KAA8490889 Regulator of telomere elongation helicase 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR010614 DEAD_2 169 336
IPR006555 ATP-dep_Helicase_C 618 817
No external refs found!