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Aliases : tig00000350_g24309.t1
Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana
Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000350.9 | |
| Cluster | HCCA: Cluster_166 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre03.g179300 | 30786668 | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | OrthoFinder | |
| Cre08.g377200 | 30773522 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder | |
| Cre09.g390000 | 30781417 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.02 | OrthoFinder | |
| Cz01g25030.t1 | No alias | Helicase, C-terminal; Chromo domain; Domain of unknown... | 0.02 | OrthoFinder | |
| Cz16g07210.t1 | No alias | Hypothetical protein | 0.01 | OrthoFinder | |
| Cz19g07040.t1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.01 | OrthoFinder | |
| Dusal.0024s00040.1 | 33202173 | SNF2-related, N-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0752s00002.1 | 33199466 | Domain of unknown function DUF3535; SNF2-related,... | 0.01 | OrthoFinder | |
| EOD18155 | No alias | High mobility group box domain; ISWI, HAND domain;... | 0.02 | OrthoFinder | |
| EOD27153 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| EOD37625 | No alias | Helicase, C-terminal; Zinc finger, PHD-finger;... | 0.01 | OrthoFinder | |
| EOD41956 | No alias | Chromo domain; Helicase, C-terminal; SNF2-related,... | 0.01 | OrthoFinder | |
| OT_07G04400.1 | No alias | Helicase, C-terminal; ISWI, HAND domain; SNF2-related,... | 0.03 | OrthoFinder | |
| OT_11G00460.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
| PTI_01G08190.1 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| PTI_02G06230.1 | No alias | Bromodomain; Helicase, C-terminal; Snf2, ATP coupling... | 0.01 | OrthoFinder | |
| PTI_05G01880.1 | No alias | High mobility group box domain; Helicase, C-terminal;... | 0.02 | OrthoFinder | |
| PTI_10G00070.1 | No alias | Helicase, C-terminal; High mobility group box domain;... | 0.02 | OrthoFinder | |
| PTI_10G02350.1 | No alias | Chromo domain; SNF2-related, N-terminal domain [Interproscan]. | 0.04 | OrthoFinder | |
| Sro125_g060200.1 | Contig2833.g22731 | Chromodomain-helicase-DNA-binding protein | 0.01 | OrthoFinder | |
| Sro386_g131880.1 | Contig4061.g31129 | Regulator of chromatin subfamily A containing DEAD/H box 1 | 0.02 | OrthoFinder | |
| TP11G02170.1 | No alias | SNF2-related, N-terminal domain; Chromo domain;... | 0.01 | OrthoFinder | |
| Transcript_contig_53936 | 53936 | Helicase, C-terminal; SNF2-related, N-terminal domain;... | 0.02 | OrthoFinder | |
| Vocar.0016s0256.1 | 32897896 | SLIDE domain; ISWI, HAND domain; Helicase, C-terminal;... | 0.03 | OrthoFinder | |
| XM_002499538.1 | MICPUN_56143, 56143 | SNF2 super family | 0.01 | OrthoFinder | |
| XM_002509111.1 | MICPUN_62843, 62843 | SNF2 super family | 0.01 | OrthoFinder | |
| XM_003061151.1 | MicpuC2_60694, 60694 | SNF2 super family | 0.02 | OrthoFinder | |
| lcl|BLLF01001410.1_cds_GFH19126.1_13603 | HaLaN_16027, GFH19126 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60614.1_4411 | PRW60614 | ATP-dependent helicase BRM | 0.01 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495718.1_1716 | KAA8495718 | Chromodomain-helicase-DNA-binding protein 2 | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | Enrichment |
| BP | GO:0000077 | DNA damage checkpoint signaling | IEP | Enrichment |
| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003774 | motor activity | IEP | Enrichment |
| MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Enrichment |
| MF | GO:0005216 | ion channel activity | IEP | Enrichment |
| MF | GO:0005244 | voltage-gated ion channel activity | IEP | Enrichment |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Enrichment |
| MF | GO:0005253 | anion channel activity | IEP | Enrichment |
| MF | GO:0005254 | chloride channel activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005576 | extracellular region | IEP | Enrichment |
| CC | GO:0005667 | transcription regulator complex | IEP | Enrichment |
| CC | GO:0005672 | transcription factor TFIIA complex | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006534 | cysteine metabolic process | IEP | Enrichment |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006811 | ion transport | IEP | Enrichment |
| BP | GO:0006821 | chloride transport | IEP | Enrichment |
| BP | GO:0006869 | lipid transport | IEP | Enrichment |
| BP | GO:0007155 | cell adhesion | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| MF | GO:0008289 | lipid binding | IEP | Enrichment |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | Enrichment |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Enrichment |
| BP | GO:0009092 | homoserine metabolic process | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Enrichment |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | Enrichment |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015267 | channel activity | IEP | Enrichment |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0016020 | membrane | IEP | Enrichment |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Enrichment |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| BP | GO:0019346 | transsulfuration | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| BP | GO:0022610 | biological adhesion | IEP | Enrichment |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0022832 | voltage-gated channel activity | IEP | Enrichment |
| MF | GO:0022836 | gated channel activity | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0031570 | DNA integrity checkpoint signaling | IEP | Enrichment |
| BP | GO:0042157 | lipoprotein metabolic process | IEP | Enrichment |
| BP | GO:0042770 | signal transduction in response to DNA damage | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Enrichment |
| BP | GO:0048519 | negative regulation of biological process | IEP | Enrichment |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Enrichment |
| BP | GO:0050667 | homocysteine metabolic process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| MF | GO:0051213 | dioxygenase activity | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0051726 | regulation of cell cycle | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Enrichment |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |