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  5. Cre02.g086887

Cre02.g086887 (30784868)


Aliases : 30784868

Description : Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana


Gene families : OG_01_0001263 (OrthoFinder) Phylogenetic Tree(s): OG0001263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g086887
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cz17g09200.t1 No alias Peptidase S59, nucleoporin; Nuclear protein 96 [Interproscan]. 0.1 OrthoFinder
Dusal.0638s00008.1 33201549 Peptidase S59, nucleoporin; Nuclear protein 96 [Interproscan]. 0.05 OrthoFinder
PTI_08G02240.1 No alias Nuclear protein 96; Peptidase S59, nucleoporin;... 0.01 OrthoFinder
Sro868_g213240.1 Contig2961.g23526 Pore complex protein Nup98-Nup96 0.02 OrthoFinder
Transcript_contig_54239 54239 Peptidase S59, nucleoporin [Interproscan]. 0.01 OrthoFinder
Vocar.0004s0438.1 32889869 Nuclear protein 96; Peptidase S59, nucleoporin [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58789.1_7222 PRW58789 Nuclear pore complex NUP98A isoform X1 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
InterPro domains Description Start Stop
IPR021967 Nup96 1747 2103
IPR007230 Peptidase_S59 885 1031
No external refs found!