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  5. Cre02.g079300

Cre02.g079300 (30786252, VPS4)


Aliases : 30786252, VPS4

Description : Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.VPS4-VTA1 ESCRT-disassembly complex.VPS4/SKD1 ATPase component


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g079300
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000769.10 tig00000769_g4005.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cpa|evm.model.tig00001126.11 tig00001126_g7122.t1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1... 0.07 OrthoFinder
Cz04g31240.t1 No alias Vps4 oligomerisation, C-terminal; ATPase, AAA-type,... 0.03 OrthoFinder
EOD25988 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.02 OrthoFinder
OT_10G00610.1 No alias MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.03 OrthoFinder
PTI_27G00180.1 No alias AAA ATPase, AAA+ lid domain; MIT; ATPase, AAA-type,... 0.06 OrthoFinder
Sro1177_g249420.1 Contig1274.g11883 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 0.02 OrthoFinder
Sro566_g167770.1 Contig3739.g28672 Fidgetin-like protein 1 0.01 OrthoFinder
TP19G02030.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation,... 0.01 OrthoFinder
Transcript_contig_54972 54972 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
Transcript_contig_59114 59114 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89153 89153 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Vocar.0004s0337.1 32889894 ATPase, AAA-type, core; Vps4 oligomerisation,... 0.04 OrthoFinder
XM_002500459.1 MICPUN_80010, 80010 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.01 OrthoFinder
XM_002501909.1 MICPUN_97315, 97315 Microtubule-severing protein katanin 60kDa subunit (KAT1) 0.03 OrthoFinder
XM_002504323.1 MICPUN_113360, 113360 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.05 OrthoFinder
XM_003057534.1 MicpuC2_16445, 16445 Microtubule-severing protein katanin 60kDa subunit (KAT1) 0.04 OrthoFinder
XM_003064781.1 MicpuC2_67802, 67802 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.04 OrthoFinder
lcl|BLLF01000275.1_cds_GFH09933.1_4410 HaLaN_05164, GFH09933 MIT [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001214.1_cds_GFH17865.1_12342 HaLaN_14580, GFH17865 AAA-ATPase of VPS4/SKD1 family 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20566.1_5469 PRW20566 ATPase family AAA domain-containing 1 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497879.1_6832 KAA8497879 Vacuolar protein sorting-associated protein 4 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR015415 Vps4_C 368 432
IPR007330 MIT_dom 9 72
IPR003959 ATPase_AAA_core 165 294
No external refs found!