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  5. Cre02.g078750

Cre02.g078750 (30785017, PUS3)


Aliases : 30785017, PUS3

Description : RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cre02.g078750
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
EOD40358 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
OT_17G00730.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
PTI_03G04160.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
PTI_04G02140.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
PTI_20G00270.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro218_g090150.1 Contig1136.g10916 Ribosomal large subunit pseudouridine synthase 0.02 OrthoFinder
Sro2354_g324530.1 Contig74.g792 Ribosomal large subunit pseudouridine synthase 0.01 OrthoFinder
Sro810_g205780.1 Contig3420.g26656 Ribosomal large subunit pseudouridine synthase D 0.01 OrthoFinder
Sro99_g050910.1 Contig1378.g12662 Ribosomal large subunit pseudouridine synthase D 0.02 OrthoFinder
SymbC1.scaffold217.3 217.3 RNA polymerase sigma-70 region 2; RNA polymerase... 0.02 OrthoFinder
Transcript_contig_57923 57923 RNA-binding S4 domain [Interproscan]. 0.01 OrthoFinder
XM_003059499.1 MicpuC2_58908, 58908 Pseudouridine synthase 0.02 OrthoFinder
XM_003063066.1 MicpuC2_36187, 36187 RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 101 135
IPR006145 PsdUridine_synth_RsuA/RluA 162 383
No external refs found!