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  5. Cre02.g077300

Cre02.g077300 (30785723, NOP1)


Aliases : 30785723, NOP1

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG_01_0002387 (OrthoFinder) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g077300
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001049.16 tig00001049_g6665.t1 RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder
Cz10g07040.t1 No alias Fibrillarin [Interproscan]. 0.1 OrthoFinder
EOD07048 No alias Ubiquitin-like domain; Fibrillarin [Interproscan]. 0.04 OrthoFinder
OT_07G01210.1 No alias Fibrillarin [Interproscan]. 0.05 OrthoFinder
PTI_20G00150.1 No alias Fibrillarin [Interproscan]. 0.05 OrthoFinder
Sro1226_g254200.1 Contig1389.g12811 RRNA 2'-O-methyltransferase fibrillarin 0.04 OrthoFinder
TP13G01650.1 No alias Fibrillarin [Interproscan]. 0.05 OrthoFinder
Transcript_contig_54582 54582 Fibrillarin [Interproscan]. 0.05 OrthoFinder
Vocar.0030s0076.1 32894520 Fibrillarin [Interproscan]. 0.05 OrthoFinder
XM_002499943.1 MICPUN_97046, 97046 Fibrillarin [Interproscan]. 0.1 OrthoFinder
XM_003055126.1 MicpuC2_61688, 61688 Fibrillarin [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000026.1_cds_GFH06193.1_670 HaLaN_00783, GFH06193 Fibrillarin [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000026.1_cds_GFH06194.1_671 HaLaN_00784, GFH06194 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01000255.1_cds_GFH09702.1_4179 HaLaN_04892, GFH09702 Mediator of RNA polymerase II transcription subunit 36a 0.06 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59290.1_6872 PRW59290 RRNA 2-O-methyltransferase fibrillarin 0.03 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491508.1_6318 KAA8491508 Putative mediator of RNA polymerase II transcription subunit 36b 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000692 Fibrillarin 83 308
No external refs found!