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  5. Cre02.g073650

Cre02.g073650 (30785080, PRP19)


Aliases : 30785080, PRP19

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component


Gene families : OG_01_0001896 (OrthoFinder) Phylogenetic Tree(s): OG0001896_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g073650
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001501.3 tig00001501_g9219.t1 Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.07 OrthoFinder
Cpa|evm.model.tig00001501.4 tig00001501_g9219.t1 Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.08 OrthoFinder
Cpa|evm.model.tig00021493.5 tig00021493_g21848.t1 Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cz07g27120.t1 No alias WD40 repeat; Pre-mRNA-splicing factor 19 [Interproscan]. 0.04 OrthoFinder
Dusal.0061s00009.1 33190670 Pre-mRNA-splicing factor 19 [Interproscan]. 0.04 OrthoFinder
OT_03G01690.1 No alias Pre-mRNA-splicing factor 19; WD40 repeat [Interproscan]. 0.02 OrthoFinder
PTI_00G01050.1 No alias Pre-mRNA-splicing factor 19; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro627_g177960.1 Contig3366.g26383 mRNA-processing factor 19 0.04 OrthoFinder
Vocar.0056s0028.1 32896680 WD40 repeat; Pre-mRNA-splicing factor 19 [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000031.1_cds_GFH06275.1_752 HaLaN_00880, GFH06275 WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20323.1_5556 PRW20323 Spliceosome nuclear pre-mRNA splicing factor 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013915 Pre-mRNA_splic_Prp19 66 131
IPR001680 WD40_repeat 248 281
IPR001680 WD40_repeat 383 415
No external refs found!