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  5. Cpa|evm.model.tig00000350.28

Cpa|evm.model.tig00000350.28 (tig00000350_g24328.t1)


Aliases : tig00000350_g24328.t1

Description : Chromatin organisation.chromatin remodeling complexes.RVB helicase component


Gene families : OG_01_0000819 (OrthoFinder) Phylogenetic Tree(s): OG0000819_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000350.28
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
Cz06g05110.t1 No alias TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.02 OrthoFinder
Dusal.0576s00001.1 33196155 TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1541.4 1541.4 TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold3396.5 3396.5 RuvB-like, AAA-lid domain [Interproscan]. 0.01 OrthoFinder
TP03G04100.1 No alias TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.02 OrthoFinder
TP12G02390.1 No alias TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.06 OrthoFinder
Transcript_contig_67463 67463 TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.01 OrthoFinder
Vocar.0046s0033.1 32892982 RuvB-like, AAA-lid domain; TIP49, P-loop domain [Interproscan]. 0.02 OrthoFinder
XM_003060424.1 MicpuC2_19130, 19130 Rvb1-like protein 0.02 OrthoFinder
XM_003063649.1 MicpuC2_44976, 44976 TIP49, P-loop domain; RuvB-like, AAA-lid domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000249.1_cds_GFH09635.1_4112 HaLaN_04814, GFH09635 RuvB-like helicase 0.04 OrthoFinder
lcl|BLLF01004324.1_cds_GFH29391.1_23868 HaLaN_28038, GFH29391 RuvB-like helicase 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39102.1_2725 PRW39102 RuvB-like 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0010921 regulation of phosphatase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019902 phosphatase binding IEP Enrichment
MF GO:0019903 protein phosphatase binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0035303 regulation of dephosphorylation IEP Enrichment
BP GO:0035304 regulation of protein dephosphorylation IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051336 regulation of hydrolase activity IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR010339 TIP49_P-loop 21 364
IPR041048 RuvB-like_C 370 435
No external refs found!