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  5. Cre01.g053250

Cre01.g053250 (30789240)


Aliases : 30789240

Description : Protein FORGETTER 1 OS=Arabidopsis thaliana


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g053250
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cz04g33080.t1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.03 OrthoFinder
Cz08g14040.t1 No alias Strawberry notch, helicase C domain;... 0.03 OrthoFinder
Cz08g29240.t1 No alias Strawberry notch, AAA domain [Interproscan]. 0.01 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.04 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.03 OrthoFinder
EOD31137 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.05 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.07 OrthoFinder
Sro106_g053630.1 Contig1122.g10760 Strawberry notch homolog 2 0.04 OrthoFinder
SymbC1.scaffold1482.6 1482.6 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.01 OrthoFinder
Vocar.0001s0130.1 32884628 Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
lcl|BLLF01001655.1_cds_GFH20545.1_15022 HaLaN_17686, GFH20545 PHD-type domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58082.1_8009 PRW58082 Strawberry notch-like protein 1-like 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58205.1_7731 PRW58205 Strawberry notch-like 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
CC GO:0005885 Arp2/3 protein complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007015 actin filament organization IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
BP GO:0010638 positive regulation of organelle organization IEP Enrichment
CC GO:0015629 actin cytoskeleton IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
BP GO:0030838 positive regulation of actin filament polymerization IEP Enrichment
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032273 positive regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0044089 positive regulation of cellular component biogenesis IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045010 actin nucleation IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051495 positive regulation of cytoskeleton organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097435 supramolecular fiber organization IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Enrichment
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 1608 1914
IPR039187 SNO_AAA 104 458
No external refs found!