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  5. Cre01.g046237

Cre01.g046237 (30788511)


Aliases : 30788511

Description : Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana


Gene families : OG_01_0000210 (OrthoFinder) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g046237
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000378.31 tig00000378_g24522.t1 DNA repair protein RAD5A OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz10g28060.t1 No alias SNF2-related, N-terminal domain; Zinc finger, C3HC4 type... 0.02 OrthoFinder
EOD35283 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.02 OrthoFinder
TP05G04030.1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
XM_002501320.1 MICPUN_81085, 81085 SNF2 super family 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 2106 2203
IPR018957 Znf_C3HC4_RING-type 1913 1956
IPR000330 SNF2_N 1018 1861
No external refs found!