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  5. Cre01.g039300

Cre01.g039300 (30789032)


Aliases : 30789032

Description : Protein biosynthesis.translation initiation.mRNA loading.PABP mRNA poly-A-tail binding factor


Gene families : OG_01_0000841 (OrthoFinder) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g039300
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001264.28 tig00001264_g7884.t1 Protein biosynthesis.translation initiation.mRNA... 0.05 OrthoFinder
OT_07G03930.1 No alias Polyadenylate-binding protein/Hyperplastic disc protein;... 0.03 OrthoFinder
PTI_28G01450.1 No alias RNA recognition motif domain; Polyadenylate-binding... 0.02 OrthoFinder
SymbC1.scaffold497.8 497.8 Polyadenylate-binding protein/Hyperplastic disc protein;... 0.02 OrthoFinder
lcl|BLLF01000087.1_cds_GFH07309.1_1786 HaLaN_02092, GFH07309 Polyadenylate-binding protein 0.07 OrthoFinder
lcl|BLLF01000095.1_cds_GFH07459.1_1936 HaLaN_02258, GFH07459 Polyadenylate-binding protein 0.04 OrthoFinder
lcl|BLLF01003252.1_cds_GFH26822.1_21299 HaLaN_25035, GFH26822 Polyadenylate-binding protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61133.1_308 PRW61133 Polyadenylate-binding 4 0.15 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61251.1_310 PRW61251 Polyadenylate binding 0.13 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496213.1_2211 KAA8496213 Embryonic polyadenylate-binding protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002004 PABP_HYD 579 645
IPR000504 RRM_dom 116 183
IPR000504 RRM_dom 205 273
IPR000504 RRM_dom 308 376
IPR000504 RRM_dom 25 97
No external refs found!