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  5. Cre01.g038650

Cre01.g038650 (30788508)


Aliases : 30788508

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g038650
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Dusal.0741s00004.1 33191036 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
PTI_02G03010.1 No alias Cleavage stimulation factor subunit 2, hinge domain; RNA... 0.01 OrthoFinder
TP16G00570.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01003769.1_cds_GFH28162.1_22639 HaLaN_26606, GFH28162 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01005805.1_cds_GFH31654.1_26131 HaLaN_30736, GFH31654 RRM domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493035.1_2771 KAA8493035 Cold-inducible RNA-binding protein B 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 35 101
No external refs found!