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  5. Cre01.g029450

Cre01.g029450 (30788422)


Aliases : 30788422

Description : Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SSRP component


Gene families : OG_01_0001888 (OrthoFinder) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g029450
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.93 tig00000076_g2391.t1 Chromatin organisation.histone chaperone activities.FACT... 0.02 OrthoFinder
Dusal.0414s00001.1 33185365 Domain of unknown function DUF1747; SSRP1 domain; High... 0.03 OrthoFinder
OT_14G01280.1 No alias SSRP1 domain; High mobility group box domain; Domain of... 0.03 OrthoFinder
Sro1996_g310030.1 Contig3556.g27464 FACT complex subunit SSRP1 0.08 OrthoFinder
Transcript_contig_89236 89236 SSRP1 domain; FACT complex subunit POB3-like, N-terminal... 0.02 OrthoFinder
Vocar.0001s0906.1 32884654 High mobility group box domain; Domain of unknown... 0.05 OrthoFinder
XM_002505740.1 MICPUN_63692, 63692 Histone chaperone 0.02 OrthoFinder
XM_003063780.1 MicpuC2_22975, 22975 Histone chaperone 0.04 OrthoFinder
lcl|BLLF01000193.1_cds_GFH08901.1_3378 HaLaN_03943, GFH08901 FACT complex subunit SSRP1 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59998.1_6358 PRW59998 FACT complex subunit SSRP1 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019781 NEDD8 activating enzyme activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 602 670
IPR024954 SSRP1_dom 109 176
IPR013719 DUF1747 358 450
IPR035417 POB3_N 7 91
No external refs found!