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  5. Cre01.g024200

Cre01.g024200 (30788323)


Aliases : 30788323

Description : RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g024200
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 tig00000402_g193.t1 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder
Cpa|evm.model.tig00020553.146 tig00020553_g10637.t1 Serine/arginine-rich splicing factor SR45a... 0.04 OrthoFinder
Cpa|evm.model.tig00021043.13 tig00021043_g17622.t1 No description available 0.02 OrthoFinder
Cz05g06060.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz07g27210.t1 No alias RNA recognition motif domain; Cleavage stimulation... 0.03 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz17g16110.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_04G03540.1 No alias RNA recognition motif domain; Zinc finger, CCCH-type... 0.03 OrthoFinder
PTI_02G03010.1 No alias Cleavage stimulation factor subunit 2, hinge domain; RNA... 0.02 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.03 OrthoFinder
Transcript_contig_3626 3626 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_57014 57014 RNA recognition motif domain; Cleavage stimulation... 0.02 OrthoFinder
Vocar.0001s0026.1 32885509 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0729.1 32886056 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0004s0355.1 32889625 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0037s0092.1 32897541 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000187.1_cds_GFH08821.1_3298 HaLaN_03852, GFH08821 RRM domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR026896 CSTF_C 348 383
IPR025742 CSTF2_hinge 147 208
No external refs found!