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  5. Cre01.g020950

Cre01.g020950 (30788544)


Aliases : 30788544

Description : Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana


Gene families : OG_01_0003990 (OrthoFinder) Phylogenetic Tree(s): OG0003990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g020950
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.62 tig00000215_g18600.t1 Ribosome biogenesis regulatory protein homolog... 0.02 OrthoFinder
Cz07g15250.t1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.21 OrthoFinder
Dusal.0009s00008.1 33190462 Ribosomal biogenesis regulatory protein [Interproscan]. 0.04 OrthoFinder
EOD32863 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.04 OrthoFinder
OT_15G01720.1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.11 OrthoFinder
PTI_07G04280.1 No alias Ribosomal biogenesis regulatory protein [Interproscan]. 0.24 OrthoFinder
Sro147_g067750.1 Contig246.g2998 Biogenesis regulatory protein homolog 0.27 OrthoFinder
Vocar.0045s0018.1 32887802 Ribosomal biogenesis regulatory protein [Interproscan]. 0.04 OrthoFinder
XM_002504986.1 MICPUN_62728, 62728 Ribosomal biogenesis regulatory protein [Interproscan]. 0.14 OrthoFinder
XM_003060538.1 MicpuC2_59933, 59933 Ribosomal biogenesis regulatory protein [Interproscan]. 0.13 OrthoFinder
lcl|BLLF01000245.1_cds_GFH09582.1_4059 HaLaN_04757, GFH09582 Ribosome biogenesis regulatory protein 0.07 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 27 186
No external refs found!