1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre01.g012450

Cre01.g012450 (30788678)


Aliases : 30788678

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase


Gene families : OG_01_0000372 (OrthoFinder) Phylogenetic Tree(s): OG0000372_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g012450
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cz15g05050.t1 No alias HECT domain; E3 ubiquitin ligase, domain of unknown... 0.05 OrthoFinder
PTI_09G01980.1 No alias HECT domain; E3 ubiquitin ligase, domain of unknown... 0.02 OrthoFinder
Sro180_g078710.1 Contig350.g4750 Probable E3 ubiquitin-protein ligase hulA 0.02 OrthoFinder
TP13G02190.1 No alias HECT domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_57387 57387 E3 ubiquitin ligase, domain of unknown function DUF913;... 0.02 OrthoFinder
Vocar.0045s0037.1 32887770 E3 ubiquitin ligase, domain of unknown function DUF913;... 0.03 OrthoFinder
XM_002502841.1 MICPUN_59359, 59359 HUWE1/Rev1, ubiquitin binding region; E3 ubiquitin... 0.03 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32549.1_3988 PRW32549 E3 ubiquitin-ligase UPL5 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20575.1_5413 PRW20575 E3 ubiquitin-ligase HUWE1 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495039.1_3569 KAA8495039 E3 ubiquitin-protein ligase UPL2 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
InterPro domains Description Start Stop
IPR010314 E3_Ub_ligase_DUF913 469 1035
IPR015940 UBA 1793 1829
IPR025527 HUWE1/Rev1_UBM 4120 4152
IPR025527 HUWE1/Rev1_UBM 4199 4214
IPR025527 HUWE1/Rev1_UBM 4169 4201
IPR025527 HUWE1/Rev1_UBM 3996 4017
IPR000569 HECT_dom 5238 5546
IPR010309 E3_Ub_ligase_DUF908 90 154
IPR010309 E3_Ub_ligase_DUF908 210 359
No external refs found!