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  5. Cre01.g003463

Cre01.g003463 (30789210)


Aliases : 30789210

Description : DNA mismatch repair protein MSH2 OS=Zea mays


Gene families : OG_01_0000718 (OrthoFinder) Phylogenetic Tree(s): OG0000718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g003463
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001224.8 tig00001224_g7630.t1 DNA damage response.DNA repair mechanisms.mismatch... 0.1 OrthoFinder
Cz05g29090.t1 No alias DNA mismatch repair protein MutS, C-terminal; DNA... 0.1 OrthoFinder
EOD15291 No alias DNA mismatch repair protein MutS, core; DNA mismatch... 0.09 OrthoFinder
EOD21949 No alias DNA mismatch repair protein muts [Ensembl]. 0.11 OrthoFinder
OT_10G02070.1 No alias DNA mismatch repair protein MutS, connector domain; DNA... 0.1 OrthoFinder
Sro301_g111920.1 Contig455.g6140 Protein MutS 0.03 OrthoFinder
Sro552_g165070.1 Contig2064.g17687 Protein MutS 0.01 OrthoFinder
TP03G05730.1 No alias DNA mismatch repair protein MutS, C-terminal [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54773 54773 DNA mismatch repair protein MutS, clamp; DNA mismatch... 0.02 OrthoFinder
Vocar.0013s0084.1 32896505 DNA mismatch repair protein MutS, C-terminal; DNA... 0.07 OrthoFinder
lcl|BLLF01000048.1_cds_GFH06639.1_1116 HaLaN_01304, GFH06639 DNA mismatch repair protein MSH2 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39072.1_2723 PRW39072 DNA mismatch repair MSH2 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497151.1_880 KAA8497151 DNA mismatch repair protein MSH4 0.02 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491466.1_6276 KAA8491466 DNA mismatch repair protein msh-2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004376 glycolipid mannosyltransferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006497 protein lipidation IEP Enrichment
BP GO:0006505 GPI anchor metabolic process IEP Enrichment
BP GO:0006506 GPI anchor biosynthetic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046474 glycerophospholipid biosynthetic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 35 134
IPR007696 DNA_mismatch_repair_MutS_core 332 570
IPR000432 DNA_mismatch_repair_MutS_C 658 847
IPR007860 DNA_mmatch_repair_MutS_con_dom 154 298
No external refs found!