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  5. Vocar.0112s0001.1

Vocar.0112s0001.1 (32896546)


Aliases : 32896546

Description : ABC transporter-like; ABC-2 type transporter; Plant PDR ABC transporter associated [Interproscan].


Gene families : OG_01_0000300 (OrthoFinder) Phylogenetic Tree(s): OG0000300_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0112s0001.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cz05g25260.t1 No alias Plant PDR ABC transporter associated; ABC-2 type... 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58352.1_7937 PRW58352 ATP-binding cassette transporter 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39246.1_2607 PRW39246 ABC transporter G family member 31-like 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013581 PDR_assoc 102 154
IPR013525 ABC_2_trans 5 85
IPR013525 ABC_2_trans 720 932
IPR003439 ABC_transporter-like_ATP-bd 368 521
No external refs found!