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  5. Vocar.0064s0040.1

Vocar.0064s0040.1 (32897709)


Aliases : 32897709

Description : Ribosomal protein S4/S9, N-terminal; RNA-binding S4 domain [Interproscan].


Gene families : OG_01_0003059 (OrthoFinder) Phylogenetic Tree(s): OG0003059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0064s0040.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000826.24 tig00000826_g4593.t1 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cre08.g359750 30774125, RPS9 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz12g07160.t1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.02 OrthoFinder
OT_09G02520.1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.03 OrthoFinder
PTI_07G00150.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.04 OrthoFinder
Sro789_g202650.1 Contig1895.g16481 40S ribosomal protein S9 0.03 OrthoFinder
TP04G02460.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.03 OrthoFinder
XM_002500563.1 MICPUN_93744, 93744 RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.05 OrthoFinder
XM_003056738.1 MicpuC2_49506, 49506 RNA-binding S4 domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492735.1_2471 KAA8492735 40S ribosomal protein S9-1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0004615 phosphomannomutase activity IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Enrichment
BP GO:0009298 GDP-mannose biosynthetic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019673 GDP-mannose metabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 12 64
IPR002942 S4_RNA-bd 109 152
No external refs found!