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  5. Vocar.0063s0039.1

Vocar.0063s0039.1 (32883464)


Aliases : 32883464

Description : DEAD/DEAH box helicase domain; ATP-dependent RNA helicase Ski2, C-terminal; Helicase, C-terminal; rRNA-processing arch domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0063s0039.1
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Cre02.g117900 30785394 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder
Cre06.g289950 30779809 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.0380s00007.1 33193499 DEAD/DEAH box helicase domain [Interproscan]. 0.03 OrthoFinder
Dusal.0632s00002.1 33192374 ATP-dependent RNA helicase Ski2, C-terminal;... 0.01 OrthoFinder
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.01 OrthoFinder
OT_06G03030.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.04 OrthoFinder
PTI_02G06900.1 No alias rRNA-processing arch domain; ATP-dependent RNA helicase... 0.01 OrthoFinder
PTI_28G01510.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.04 OrthoFinder
Sro587_g171320.1 Contig2233.g18555 Viralicidic activity 2-like 2 0.02 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.03 OrthoFinder
XM_003058844.1 MicpuC2_44314, 44314 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.01 OrthoFinder
lcl|BLLF01005152.1_cds_GFH30799.1_25276 HaLaN_29719, GFH30799 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.02 OrthoFinder
lcl|BLLF01009432.1_cds_GFH33722.1_28199 HaLaN_33132, GFH33722 Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491098.1_9855 KAA8491098 Superkiller viralicidic activity 2-like 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 487 566
IPR011545 DEAD/DEAH_box_helicase_dom 101 248
IPR025696 rRNA_proc-arch_dom 624 894
IPR012961 Ski2_C 922 1091
No external refs found!