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  5. Vocar.0057s0005.1

Vocar.0057s0005.1 (32894700)


Aliases : 32894700

Description : Exosome complex exonuclease RRP44, S1 domain; Ribonuclease II/R; PIN domain; Dis3-like cold-shock domain 2; Rrp44-like cold shock domain [Interproscan].


Gene families : OG_01_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0057s0005.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cre03.g208100 30787711, RNB1 Inactive exonuclease DIS3L2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Dusal.0201s00013.1 33186097 Ribonuclease II/R; Dis3-like cold-shock domain 2 [Interproscan]. 0.03 OrthoFinder
Dusal.0904s00002.1 33200163 Exosome complex exonuclease RRP44, S1 domain; PIN... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006743 ubiquinone metabolic process IEP Enrichment
BP GO:0006744 ubiquinone biosynthetic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1901661 quinone metabolic process IEP Enrichment
BP GO:1901663 quinone biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR033770 RRP44_S1 891 988
IPR002716 PIN_dom 56 177
IPR033771 Rrp44_CSD1 244 320
IPR001900 RNase_II/R 509 838
IPR041505 Dis3_CSD2 411 478
No external refs found!