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  5. Vocar.0048s0021.1

Vocar.0048s0021.1 (32893643)


Aliases : 32893643

Description : Exonuclease, RNase T/DNA polymerase III [Interproscan].


Gene families : OG_01_0000873 (OrthoFinder) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0048s0021.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cre11.g480060 30775535 No description available 0.04 OrthoFinder
EOD35209 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
OT_02G02480.1 No alias Ribonuclease H domain; Exonuclease, RNase T/DNA... 0.04 OrthoFinder
OT_03G01160.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.03 OrthoFinder
PTI_11G02920.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.02 OrthoFinder
Sro246_g097710.1 Contig171.g1955 Interferon-stimulated 20 kDa exonuclease-like 2 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59412.1_7034 PRW59412 RNA exonuclease 4 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 312 465
No external refs found!