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  5. Vocar.0046s0048.1

Vocar.0046s0048.1 (32892962)


Aliases : 32892962

Description : PAN/Apple domain; Carbohydrate-binding WSC [Interproscan].


Gene families : OG_01_0003978 (OrthoFinder) Phylogenetic Tree(s): OG0003978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0046s0048.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Vocar.0018s0160.1 32898708 PAN/Apple domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004615 phosphomannomutase activity IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Enrichment
BP GO:0009298 GDP-mannose biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019673 GDP-mannose metabolic process IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002889 WSC_carb-bd 672 752
IPR002889 WSC_carb-bd 784 865
IPR003609 Pan_app 224 263
No external refs found!