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  5. Vocar.0045s0043.1

Vocar.0045s0043.1 (32887754)


Aliases : 32887754

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal; Exonuclease, RNase T/DNA polymerase III [Interproscan].


Gene families : OG_01_0001341 (OrthoFinder) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0045s0043.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
OT_05G01350.1 No alias CarD-like/TRCF domain; Helicase, C-terminal; DEAD/DEAH... 0.02 OrthoFinder
OT_09G03030.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
PTI_24G00670.1 No alias Helicase, C-terminal; CarD-like/TRCF domain; DEAD/DEAH... 0.02 OrthoFinder
TP23G00230.1 No alias CarD-like/TRCF domain; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_002507410.1 MICPUN_113163, 113163 Exonuclease and DNA helicase (REX) 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56925.1_8799 PRW56925 ATP-dependent DNA helicase 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497060.1_789 KAA8497060 Transcription-repair-coupling factor 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1643 1790
IPR001650 Helicase_C 1880 1966
IPR013520 Exonuclease_RNaseT/DNA_pol3 402 572
No external refs found!