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  5. Vocar.0044s0038.1

Vocar.0044s0038.1 (32896597)


Aliases : 32896597

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0044s0038.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre07.g352650 30775322 No description available 0.04 OrthoFinder
Cre09.g391949 30781196 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Cz03g21120.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Dusal.0862s00006.1 33191519 Hypothetical protein 0.02 OrthoFinder
Sro760_g198350.1 Contig3371.g26396 U2AF 65 kDa subunit 0.01 OrthoFinder
Transcript_contig_55128 55128 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_56236 56236 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_002506777.1 MICPUN_89118, 89118 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 328 397
IPR000504 RRM_dom 198 269
No external refs found!