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  5. Vocar.0042s0090.1

Vocar.0042s0090.1 (32892155)


Aliases : 32892155

Description : CENP-T/Histone H4, histone fold [Interproscan].


Gene families : OG_01_0000049 (OrthoFinder) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0042s0090.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264600 30778471, HFO14 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g265050 30779745, HFO13 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g265200 30779324 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre06.g265450 30780160, HFO12 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g266600 30779351 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g268000 30778752, HFO10 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g268400 30778503, HFO9 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre06.g271300 30778524, HFO8 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre06.g274150 30779076 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre06.g274300 30779970, HFO29 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g274900 30779353 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g275700 30779739, HFO4 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g276650 30778456 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre06.g276800 30779091, HFO24 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre12.g504600 30793030, HFO15 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre12.g504850 30792412, HFO16 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre12.g505450 30792334, HFO17 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre12.g506350 30793405, HFO18 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre12.g506450 30793367, HFO35 Chromatin organisation.histones.H4-type histone 0.04 OrthoFinder
Cre16.g649950 30777380, HFO40 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre16.g650250 30776811, HFO39 Chromatin organisation.histones.H4-type histone 0.02 OrthoFinder
Cre17.g708650 30782678, HFO20 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cre17.g709100 30782193 Chromatin organisation.histones.H4-type histone 0.03 OrthoFinder
Cz05g04160.t1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
Cz07g08160.t1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
Cz08g27150.t1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
Cz13g04220.t1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
Cz18g11090.t1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
Dusal.0093s00025.1 33185347 CENP-T/Histone H4, histone fold [Interproscan]. 0.02 OrthoFinder
Dusal.0322s00003.1 33197810 CENP-T/Histone H4, histone fold [Interproscan]. 0.04 OrthoFinder
Dusal.0658s00001.1 33202426 Hypothetical protein 0.02 OrthoFinder
EOD13039 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD22955 No alias Putative histone H4 [Ensembl]. 0.01 OrthoFinder
EOD23019 No alias Putative histone H4 [Ensembl]. 0.02 OrthoFinder
OT_11G02240.1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.02 OrthoFinder
PTI_06G03840.1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.02 OrthoFinder
PTI_06G03920.1 No alias CENP-T/Histone H4, histone fold [Interproscan]. 0.02 OrthoFinder
Sro1535_g280560.1 Contig3021.g24093 Histone H4 0.02 OrthoFinder
Sro1642_g288070.1 Contig4503.g33765 Histone H4 0.03 OrthoFinder
Sro2314_g322920.1 Contig3467.g26906 Histone H4 0.04 OrthoFinder
XM_003059474.1 MicpuC2_17893, 17893 CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
XM_003061468.1 MicpuC2_20662, 20662 Histone H4 0.03 OrthoFinder
XM_003061710.1 MicpuC2_51276, 51276 CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder
XM_003062992.1 MicpuC2_52643, 52643 CENP-T/Histone H4, histone fold [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0047750 cholestenol delta-isomerase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR035425 CENP-T/H4_C 34 96
No external refs found!