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  5. Vocar.0042s0089.1

Vocar.0042s0089.1 (32892042)


Aliases : 32892042

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0042s0089.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265000 30778874 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g265250 30779294 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre06.g266650 30779741 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g267950 30779543, HTR10 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274000 30779747, HTR7 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274101 30779608 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274350 30778588, HTR29 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274850 30778497 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g275750 30779137 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g276600 30779595 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g276850 30778983, HTR24 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre12.g504650 30791932 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre12.g504800 30793536, HTR16 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre12.g505500 30793498, HTR17 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre12.g506300 30792290, HTR18 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre12.g506500 30792666, HTR35 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre13.g569950 30784075, HTR2 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre17.g708150 30782647, HTR36 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre17.g708700 30782453, HTR20 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre17.g709050 30782593, HTR3 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cz13g04210.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD22942 No alias Putative histone H3 [Ensembl]. 0.02 OrthoFinder
EOD31711 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD33509 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD34125 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro228_g092790.1 Contig1235.g11593 Histone H3 0.02 OrthoFinder
Sro2314_g322910.1 Contig3467.g26905 Histone H3 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 131
No external refs found!