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  5. Vocar.0042s0028.1

Vocar.0042s0028.1 (32892021)


Aliases : 32892021

Description : FY-rich, C-terminal; Zinc finger, PHD-finger; Methyl-CpG DNA binding; WHIM2 domain; WHIM1 domain [Interproscan].


Gene families : OG_01_0000700 (OrthoFinder) Phylogenetic Tree(s): OG0000700_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0042s0028.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Cre08.g380151 30774050 No description available 0.03 OrthoFinder
Dusal.0388s00010.1 33197672 Zinc finger, PHD-finger [Interproscan]. 0.02 OrthoFinder
Dusal.0759s00003.1 33194751 Hypothetical protein 0.04 OrthoFinder
EOD34220 No alias Zinc finger, PHD-finger; Zinc finger, CXXC-type [Interproscan]. 0.01 OrthoFinder
OT_02G01960.1 No alias Zinc finger, PHD-finger [Interproscan]. 0.02 OrthoFinder
XM_002505188.1 MICPUN_62531, 62531 Zinc finger, PHD-finger; Methyl-CpG DNA binding; WHIM1... 0.02 OrthoFinder
XM_002508552.1 MICPUN_62154, 62154 Zinc finger, C3HC4 RING-type; Zinc finger, PHD-finger... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
CC GO:0005664 nuclear origin of replication recognition complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR028941 WHIM2_dom 1642 1801
IPR019787 Znf_PHD-finger 1234 1280
IPR028942 WHIM1_dom 1461 1494
IPR001739 Methyl_CpG_DNA-bd 133 179
IPR003889 FYrich_C 448 501
No external refs found!