1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0040s0089.1

Vocar.0040s0089.1 (32886233)


Aliases : 32886233

Description : Chaperonin Cpn60/TCP-1 family [Interproscan].


Gene families : OG_01_0002693 (OrthoFinder) Phylogenetic Tree(s): OG0002693_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0040s0089.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000157.20 tig00000157_g9607.t1 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.04 OrthoFinder
Cre03.g168450 30788210, CCT8 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.06 OrthoFinder
Cz01g25210.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
Cz01g25220.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
EOD37191 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.05 OrthoFinder
OT_03G03560.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
Sro163_g073140.1 Contig1793.g15847 Complex protein 1 subunit theta 0.05 OrthoFinder
TP06G04660.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
Transcript_contig_54448 54448 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
XM_002499420.1 MICPUN_104761, 104761 TCP-1/cpn60 chaperonin family protein (TCP-1) 0.05 OrthoFinder
XM_003055695.1 MicpuC2_31125, 31125 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000604.1_cds_GFH13366.1_7843 HaLaN_09237, GFH13366 Chaperonin complex component 0.04 OrthoFinder
lcl|BLLF01000604.1_cds_GFH13367.1_7844 HaLaN_09238, GFH13367 Chaperonin complex component 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56475.1_9784 PRW56475 T-complex 1 subunit theta 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491814.1_4822 KAA8491814 T-complex protein 1 subunit theta 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 37 528
No external refs found!