1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0037s0092.1

Vocar.0037s0092.1 (32897541)


Aliases : 32897541

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0037s0092.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.16 tig00000402_g193.t1 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder
Cpa|evm.model.tig00000826.12 tig00000826_g4577.t1 Glycine-rich RNA-binding protein 4, mitochondrial... 0.02 OrthoFinder
Cpa|evm.model.tig00021043.13 tig00021043_g17622.t1 No description available 0.02 OrthoFinder
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.03 OrthoFinder
Cre13.g586916 30783868 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Cz06g14010.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_3626 3626 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_57315 57315 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_003057264.1 MicpuC2_62347, 62347 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000062.1_cds_GFH06898.1_1375 HaLaN_01614, GFH06898 RRM domain-containing protein 0.01 OrthoFinder
lcl|BLLF01003429.1_cds_GFH27307.1_21784 HaLaN_25610, GFH27307 RRM domain-containing protein 0.03 OrthoFinder
lcl|BLLF01003769.1_cds_GFH28162.1_22639 HaLaN_26606, GFH28162 RRM domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59679.1_6108 PRW59679 Cleavage stimulating factor 64-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 134 203
No external refs found!