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  5. Vocar.0037s0021.1

Vocar.0037s0021.1 (32897603)


Aliases : 32897603

Description : Nop domain; NOP5, N-terminal [Interproscan].


Gene families : OG_01_0003488 (OrthoFinder) Phylogenetic Tree(s): OG0003488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0037s0021.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001073.20 tig00001073_g6828.t1 RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder
Cre12.g525200 30792563, NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder
Cz05g21140.t1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.06 OrthoFinder
OT_08G00480.1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.06 OrthoFinder
PTI_03G02870.1 No alias NOP5, N-terminal; Nop domain [Interproscan]. 0.07 OrthoFinder
Transcript_contig_55629 55629 NOP5, N-terminal; Nop domain [Interproscan]. 0.04 OrthoFinder
XM_003058716.1 MicpuC2_33398, 33398 NOP5, N-terminal; Nop domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000053.1_cds_GFH06734.1_1211 HaLaN_01415, GFH06734 Nucleolar protein, component of C/D snoRNPs 0.04 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20780.1_5037 PRW20780 Nucleolar 56 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012974 NOP5_N 4 68
IPR002687 Nop_dom 176 408
No external refs found!