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  5. Vocar.0037s0009.1

Vocar.0037s0009.1 (32897497)


Aliases : 32897497

Description : SET domain; Rubisco LSMT, substrate-binding domain [Interproscan].


Gene families : OG_01_0000712 (OrthoFinder) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0037s0009.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000658.25 tig00000658_g2915.t1 Ribulose-1,5 bisphosphate carboxylase/oxygenase large... 0.04 OrthoFinder
Cpa|evm.model.tig00020554.100 tig00020554_g10878.t1 Enzyme classification.EC_2 transferases.EC_2.1... 0.01 OrthoFinder
Cre12.g524500 30793297, RMT2 No description available 0.11 OrthoFinder
Dusal.1144s00001.1 33201503 Rubisco LSMT, substrate-binding domain [Interproscan]. 0.02 OrthoFinder
OT_03G04610.1 No alias Rubisco LSMT, substrate-binding domain [Interproscan]. 0.04 OrthoFinder
OT_09G03150.1 No alias SET domain; Rubisco LSMT, substrate-binding domain... 0.05 OrthoFinder
Sro1726_g293820.1 Contig1975.g16891 Ribulose-1,5 bisphosphate carboxylase/oxygenase large... 0.02 OrthoFinder
Transcript_contig_56157 56157 Rubisco LSMT, substrate-binding domain [Interproscan]. 0.02 OrthoFinder
UNPLg00124.t1 No alias Rubisco LSMT, substrate-binding domain [Interproscan]. 0.02 OrthoFinder
XM_002508478.1 MICPUN_97985, 97985 Set domain protein 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58899.1_7019 PRW58899 Rubisco small subunit N-methyltransferase 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500067.1_9020 KAA8500067 Ribulose-1,5 bisphosphate carboxylase/oxygenase large... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001214 SET_dom 89 287
IPR015353 Rubisco_LSMT_subst-bd 320 435
No external refs found!