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Aliases : 32892216
Description : RNA recognition motif domain [Interproscan].
Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0036s0063.1 | |
| Cluster | HCCA: Cluster_44 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| EOD21349 | No alias | Hypothetical protein [Ensembl]. | 0.02 | OrthoFinder | |
| PTI_05G02080.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW56919.1_8884 | PRW56919 | Splicing factor U2af large subunit A-like isoform X1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000041 | transition metal ion transport | IEP | Enrichment |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| MF | GO:0003857 | 3-hydroxyacyl-CoA dehydrogenase activity | IEP | Enrichment |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Enrichment |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | Enrichment |
| MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0005543 | phospholipid binding | IEP | Enrichment |
| CC | GO:0005856 | cytoskeleton | IEP | Enrichment |
| CC | GO:0005956 | protein kinase CK2 complex | IEP | Enrichment |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Enrichment |
| BP | GO:0006013 | mannose metabolic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006826 | iron ion transport | IEP | Enrichment |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Enrichment |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Enrichment |
| MF | GO:0015631 | tubulin binding | IEP | Enrichment |
| MF | GO:0015923 | mannosidase activity | IEP | Enrichment |
| CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
| MF | GO:0016746 | acyltransferase activity | IEP | Enrichment |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Enrichment |
| MF | GO:0016868 | intramolecular transferase activity, phosphotransferases | IEP | Enrichment |
| MF | GO:0019207 | kinase regulator activity | IEP | Enrichment |
| MF | GO:0019887 | protein kinase regulator activity | IEP | Enrichment |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
| BP | GO:0034755 | iron ion transmembrane transport | IEP | Enrichment |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | Enrichment |
| BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Enrichment |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Enrichment |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 1465 | 1534 |
| No external refs found! |