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  5. Vocar.0035s0125.1

Vocar.0035s0125.1 (32896929)


Aliases : 32896929

Description : DDT domain; Bromodomain; Zinc finger, PHD-finger [Interproscan].


Gene families : OG_01_0009507 (OrthoFinder) Phylogenetic Tree(s): OG0009507_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0035s0125.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre05.g247000 30783342 No description available 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57083.1_9195 PRW57083 Swr1 complex bromodomain subunit Brf1 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR001487 Bromodomain 2285 2367
IPR001487 Bromodomain 2087 2165
IPR001487 Bromodomain 2449 2527
IPR019787 Znf_PHD-finger 658 700
IPR019787 Znf_PHD-finger 1760 1810
IPR018501 DDT_dom 360 413
No external refs found!