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  5. Vocar.0034s0036.1

Vocar.0034s0036.1 (32893002)


Aliases : 32893002

Description : ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp ATPase, C-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0034s0036.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000655.28 tig00000655_g2853.t1 External stimuli response.temperature.Hsp... 0.02 OrthoFinder
Cre11.g467575 30775868 External stimuli response.temperature.Hsp... 0.02 OrthoFinder
Cre12.g533351 30793290 Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz09g26150.t1 No alias Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.02 OrthoFinder
Cz16g16110.t1 No alias ATPase, AAA-type, core; Clp, N-terminal; ClpA/ClpB, AAA... 0.03 OrthoFinder
OT_01G00710.1 No alias ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal;... 0.02 OrthoFinder
Sro1170_g248780.1 Contig3531.g27307 Protein ClpB 0.01 OrthoFinder
Sro20_g014290.1 Contig2954.g23459 Protein ClpB 0.03 OrthoFinder
SymbC1.scaffold1.1846 1.1846 Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp,... 0.02 OrthoFinder
SymbC1.scaffold73.29 73.29 Clp, N-terminal; Adaptor protein ClpS, core; Clp ATPase,... 0.02 OrthoFinder
XM_002504224.1 MICPUN_61300, 61300 ATP-dependent clp protease (CLP2) 0.01 OrthoFinder
lcl|BLLF01001856.1_cds_GFH21573.1_16050 HaLaN_18906, GFH21573 AAA domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61387.1_219 PRW61387 ATP-dependent Clp protease ATP-binding subunit-like... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP Enrichment
BP GO:0000077 DNA damage checkpoint signaling IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
BP GO:0031570 DNA integrity checkpoint signaling IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0042770 signal transduction in response to DNA damage IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:1901987 regulation of cell cycle phase transition IEP Enrichment
BP GO:1901988 negative regulation of cell cycle phase transition IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 203 290
IPR041546 ClpA/ClpB_AAA_lid 345 439
IPR003959 ATPase_AAA_core 670 873
IPR019489 Clp_ATPase_C 880 960
No external refs found!