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  5. Vocar.0033s0068.1

Vocar.0033s0068.1 (32886323)


Aliases : 32886323

Description : Ribulose bisphosphate carboxylase small chain, domain [Interproscan].


Gene families : OG_01_0001359 (OrthoFinder) Phylogenetic Tree(s): OG0001359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0033s0068.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cz17g13100.t1 No alias Ribulose bisphosphate carboxylase small chain, domain... 0.03 OrthoFinder
Dusal.0488s00011.1 33201766 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
Dusal.1014s00004.1 33200029 Ribulose bisphosphate carboxylase small chain, domain... 0.04 OrthoFinder
XM_002500716.1 MICPUN_104787, 104787 Ribulose bisphosphate carboxylase small chain 1,... 0.02 OrthoFinder
XM_003064578.1 MicpuC2_37117, 37117 Ribulose bisphosphate carboxylase small chain, domain... 0.02 OrthoFinder
XM_003064579.1 MicpuC2_66674, 66674 Ribulose bisphosphate carboxylase small chain, domain... 0.04 OrthoFinder
lcl|BLLF01001246.1_cds_GFH18086.1_12563 HaLaN_14829, GFH18086 Ribulose bisphosphate carboxylase small chain 0.04 OrthoFinder
lcl|BLLF01001696.1_cds_GFH20785.1_15262 HaLaN_17963, GFH20785 Ribulose bisphosphate carboxylase small chain 0.05 OrthoFinder
lcl|BLLF01002948.1_cds_GFH25897.1_20374 HaLaN_23940, GFH25897 Ribulose bisphosphate carboxylase small chain 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60509.1_4708 PRW60509 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60779.1_4709 PRW60779 Ribulose bisphosphate small subunit precursor 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 58 172
No external refs found!