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  5. Vocar.0033s0044.1

Vocar.0033s0044.1 (32886333)


Aliases : 32886333

Description : WD40 repeat; Coatomer, WD associated region [Interproscan].


Gene families : OG_01_0001908 (OrthoFinder) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0033s0044.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.33 tig00020903_g15100.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cre02.g118500 30785510, COPB2 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder
Dusal.0118s00001.1 33199944 Hypothetical protein 0.02 OrthoFinder
Dusal.0118s00002.1 33199925 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.05 OrthoFinder
EOD29435 No alias COPB2, beta' subunit of the coatomer [Ensembl]. 0.05 OrthoFinder
OT_01G02470.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
PTI_09G00050.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro108_g054340.1 Contig2294.g19014 Coatomer subunit beta 0.05 OrthoFinder
Sro93_g048640.1 Contig3841.g29552 Coatomer subunit beta 0.04 OrthoFinder
SymbC1.scaffold1764.4 1764.4 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.03 OrthoFinder
TP04G00710.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.06 OrthoFinder
Transcript_contig_54449 54449 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
UNPLg00368.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000946.1_cds_GFH16103.1_10580 HaLaN_12461, GFH16103 Coatomer subunit beta' 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492792.1_2528 KAA8492792 Coatomer subunit beta'-1 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006750 glutathione biosynthetic process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 762
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 220 256
IPR001680 WD40_repeat 178 215
IPR001680 WD40_repeat 132 171
No external refs found!