Vocar.0031s0019.1 (32890092)

Aliases : 32890092

Description : Ribosomal protein L6, alpha-beta domain [Interproscan].

Gene families : OG_01_0003467 (OrthoFinder) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0031s0019.1
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001532.12	tig00001532_g9278.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder
Cre12.g494050	30792426, RPL9	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder
Cz02g22040.t1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.07	OrthoFinder
Dusal.0391s00002.1	33187356	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.07	OrthoFinder
EOD38177	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.09	OrthoFinder
OT_04G01760.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.05	OrthoFinder
PTI_04G03310.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.08	OrthoFinder
Sro227_g092220.1	Contig327.g4334	60S ribosomal protein L9	0.1	OrthoFinder
TP02G08750.1	No alias	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.05	OrthoFinder
XM_002501436.1	MICPUN_106868, 106868	Ribosomal l9-like protein	0.08	OrthoFinder
XM_003057971.1	MicpuC2_32821, 32821	Ribosomal protein L6, alpha-beta domain [Interproscan].	0.05	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492880.1_2616	KAA8492880	60S ribosomal protein L9-2	0.06	OrthoFinder
lcl\|VRMN01000024.1_cds_KAA8490502.1_4652	KAA8490502	60S ribosomal protein L9-2	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	12	88
IPR020040	Ribosomal_L6_a/b-dom	100	179

External Links

No external refs found!

Vocar.0031s0019.1 (32890092)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation