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  5. Vocar.0030s0089.1

Vocar.0030s0089.1 (32894554)


Aliases : 32894554

Description : Zinc finger, C3HC4 RING-type; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0007771 (OrthoFinder) Phylogenetic Tree(s): OG0007771_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0030s0089.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000655.65 tig00000655_g2895.t1 Putative SWI/SNF-related matrix-associated... 0.02 OrthoFinder
Cpa|evm.model.tig00020537.55 tig00020537_g10280.t1 No description available 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 536 976
IPR018957 Znf_C3HC4_RING-type 1687 1726
No external refs found!