Vocar.0029s0128.1 (32887338)


Aliases : 32887338

Description : WD40 repeat; Small-subunit processome, Utp21 [Interproscan].


Gene families : OG_01_0002791 (OrthoFinder) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0029s0128.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021348.51 tig00021348_g20554.t1 No description available 0.05 OrthoFinder
Cre10.g466250 30790775 No description available 0.08 OrthoFinder
Cz08g20100.t1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.09 OrthoFinder
EOD22329 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.05 OrthoFinder
OT_17G00290.1 No alias Small-subunit processome, Utp21; WD40 repeat;... 0.05 OrthoFinder
PTI_01G00980.1 No alias Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.08 OrthoFinder
Sro1313_g261950.1 Contig4199.g31963 RNA-associated protein 21 homolog 0.09 OrthoFinder
TP02G03700.1 No alias WD40 repeat; Small-subunit processome, Utp21 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_5700 5700 Hypothetical protein 0.02 OrthoFinder
XM_002508565.1 MICPUN_98006, 98006 Small-subunit processome, Utp21; WD40 repeat [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06094.1_571 HaLaN_00667, GFH06094 Small-subunit processome, Utp21 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001420.1_cds_GFH19190.1_13667 HaLaN_16097, GFH19190 U3 small nucleolar RNA-associated 21-like protein 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58237.1_8075 PRW58237 U3 small nucleolar RNA-associated 21-like protein 0.07 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492447.1_9140 KAA8492447 WD repeat-containing protein 36 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006166 purine ribonucleoside salvage IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006190 inosine salvage IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008252 nucleotidase activity IEP Enrichment
MF GO:0008253 5'-nucleotidase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042278 purine nucleoside metabolic process IEP Enrichment
BP GO:0042451 purine nucleoside biosynthetic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043094 cellular metabolic compound salvage IEP Enrichment
BP GO:0043101 purine-containing compound salvage IEP Enrichment
BP GO:0043174 nucleoside salvage IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0046102 inosine metabolic process IEP Enrichment
BP GO:0046103 inosine biosynthetic process IEP Enrichment
BP GO:0046128 purine ribonucleoside metabolic process IEP Enrichment
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Enrichment
MF GO:0050483 IMP 5'-nucleotidase activity IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 552 584
IPR001680 WD40_repeat 631 667
IPR007319 SSU_processome_Utp21 819 1090
No external refs found!