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  5. Vocar.0029s0121.1

Vocar.0029s0121.1 (32887304)


Aliases : 32887304

Description : C-type lectin-like; SRCR domain [Interproscan].


Gene families : OG_01_0000994 (OrthoFinder) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0029s0121.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_56936 56936 SRCR domain [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0621.1 32884675 SRCR domain; Serine proteases, trypsin domain [Interproscan]. 0.04 OrthoFinder
Vocar.0001s0665.1 32885244 SRCR domain [Interproscan]. 0.04 OrthoFinder
Vocar.0015s0329.1 32898982 SRCR domain [Interproscan]. 0.01 OrthoFinder
Vocar.0047s0024.1 32899283 Peptidase S8/S53 domain; SRCR domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61145.1_559 PRW61145 Deleted in malignant brain tumors 1-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005044 scavenger receptor activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001304 C-type_lectin-like 806 922
IPR001190 SRCR 1208 1303
IPR001190 SRCR 1456 1549
IPR001190 SRCR 1327 1432
No external refs found!