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  5. Vocar.0028s0192.1

Vocar.0028s0192.1 (32895671)


Aliases : 32895671

Description : WD40 repeat; Zinc finger, C3HC4 type (RING finger) [Interproscan].


Gene families : OG_01_0001635 (OrthoFinder) Phylogenetic Tree(s): OG0001635_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0028s0192.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053850 30788730 WD repeat-containing protein RUP1 OS=Arabidopsis thaliana 0.1 OrthoFinder
Cre02.g085050 30785833 E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana 0.11 OrthoFinder
Cz05g04250.t1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
Cz09g04220.t1 No alias Hypothetical protein 0.05 OrthoFinder
Cz10g05130.t1 No alias WD40 repeat; Zinc finger, C3HC4 type (RING finger)... 0.03 OrthoFinder
XM_002503783.1 MICPUN_59822, 59822 Response regulator receiver/WD40 domain fusion protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1207 1245
No external refs found!