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  5. Vocar.0027s0175.1

Vocar.0027s0175.1 (32887239)


Aliases : 32887239

Description : Squalene/phytoene synthase [Interproscan].


Gene families : OG_01_0001265 (OrthoFinder) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0027s0175.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001093.21 tig00001093_g6898.t1 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder
Cz05g32220.t1 No alias Squalene/phytoene synthase [Interproscan]. 0.03 OrthoFinder
Dusal.0943s00001.1 33203020 Squalene/phytoene synthase [Interproscan]. 0.02 OrthoFinder
OT_05G03610.1 No alias Squalene/phytoene synthase [Interproscan]. 0.03 OrthoFinder
XM_002508472.1 MICPUN_85839, 85839 Phytoene synthase (PSY1) 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491175.1_5803 KAA8491175 All-trans-phytoene synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019310 inositol catabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044275 cellular carbohydrate catabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0050113 inositol oxygenase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!