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  5. Vocar.0027s0148.1

Vocar.0027s0148.1 (32887083)


Aliases : 32887083

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0027s0148.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.04 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
OT_12G00920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57107.1_9026 PRW57107 Histone 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33081.1_3816 PRW33081 Histone 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 131
No external refs found!