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  5. Vocar.0027s0142.1

Vocar.0027s0142.1 (32887220)


Aliases : 32887220

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0027s0142.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020801.48 tig00020801_g13931.t1 Histone H3.3 OS=Vitis vinifera 0.02 OrthoFinder
Cre06.g264650 30779911, HTR27 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g265000 30778874 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g265250 30779294 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g266650 30779741 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g267950 30779543, HTR10 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre06.g268350 30778762, HTR9 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre06.g274000 30779747, HTR7 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre06.g274101 30779608 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre06.g274350 30778588, HTR29 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g274850 30778497 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g275750 30779137 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre06.g276600 30779595 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre06.g276850 30778983, HTR24 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre12.g504650 30791932 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g504800 30793536, HTR16 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g505500 30793498, HTR17 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g506300 30792290, HTR18 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre12.g506500 30792666, HTR35 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre13.g569950 30784075, HTR2 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre17.g708150 30782647, HTR36 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cre17.g708700 30782453, HTR20 Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder
Cre17.g709050 30782593, HTR3 Chromatin organisation.histones.H3-type histone 0.04 OrthoFinder
Cz05g04150.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz07g08150.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz08g27160.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz13g04210.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.06 OrthoFinder
Cz18g11080.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Dusal.0093s00033.1 33185318 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.0194s00024.1 33199901 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.1067s00005.1 33188990 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Dusal.1079s00002.1 33193518 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD06916 No alias Putative histone H3 [Ensembl]. 0.01 OrthoFinder
EOD22942 No alias Putative histone H3 [Ensembl]. 0.03 OrthoFinder
EOD23663 No alias Putative histone H3 [Ensembl]. 0.01 OrthoFinder
EOD27405 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD31711 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD33509 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD34125 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
OT_11G02230.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G03830.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
PTI_06G03900.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro228_g092790.1 Contig1235.g11593 Histone H3 0.02 OrthoFinder
Sro2314_g322910.1 Contig3467.g26905 Histone H3 0.02 OrthoFinder
Sro348_g123190.1 Contig2346.g19285 Histone H3 0.02 OrthoFinder
Sro69_g038380.1 Contig4677.g34747 Histone H3 0.02 OrthoFinder
Sro749_g196770.1 Contig2460.g20134 Histone H3 0.02 OrthoFinder
XM_003059175.1 MicpuC2_27286, 27286 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
XM_003061662.1 MicpuC2_48264, 48264 Histone H2A/H2B/H3 [Interproscan]. 0.04 OrthoFinder
XM_003061708.1 MicpuC2_48289, 48289 Histone H3 0.05 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 131
No external refs found!