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  5. Vocar.0027s0022.1

Vocar.0027s0022.1 (32887254)


Aliases : 32887254

Description : Beta-adaptin appendage, C-terminal subdomain; Clathrin/coatomer adaptor, adaptin-like, N-terminal [Interproscan].


Gene families : OG_01_0000809 (OrthoFinder) Phylogenetic Tree(s): OG0000809_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0027s0022.1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020592.38 tig00020592_g11671.t1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder
Cre05.g234665 30783487, AP4B4 Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder
Cre11.g478156 30775875 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder
Cz02g23050.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.04 OrthoFinder
Cz14g09210.t1 No alias Clathrin/coatomer adaptor, adaptin-like, N-terminal;... 0.03 OrthoFinder
Dusal.0391s00014.1 33187360 Clathrin/coatomer adaptor, adaptin-like, N-terminal... 0.02 OrthoFinder
EOD14985 No alias Adaptor protein 2 beta subunit 1 [Ensembl]. 0.03 OrthoFinder
EOD29886 No alias Adaptor protein complex 1 or 2, subunit beta B [Ensembl]. 0.02 OrthoFinder
PTI_13G02480.1 No alias Beta-adaptin appendage, C-terminal subdomain;... 0.02 OrthoFinder
Sro413_g138080.1 Contig3915.g30008 AP-1 complex subunit beta-1 0.06 OrthoFinder
Sro951_g223960.1 Contig3277.g25794 AP-1 complex subunit beta-1 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030131 clathrin adaptor complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR015151 B-adaptin_app_sub_C 849 956
IPR002553 Clathrin/coatomer_adapt-like_N 14 539
No external refs found!